Skills DirectorySearch all skills ↗AI Ml AI agent skills
8,771 skills in the archive. Read a skill’s instructions or open its original repository.
Drug Target Evidence Landscape
by @aipoch
Organizes the evidence and competitive landscape around a drug, target, or pathway by separating disease relevance, tractability, preclinical evidence, clinical evidence, modality fit, and crowding. Always map what is…
Wgcna Analysis
by @aipoch
Use when building a weighted gene co-expression network from a bulk expression matrix and a sample group file, filtering variable genes by MAD, identifying co-expression modules with WGCNA, correlating modules with traits, and…
Umap Tsne Analysis
by @aipoch
Use when performing sample-level dimensionality reduction and visualization on abundance or OTU-style matrices with a companion group file, generating UMAP and/or t-SNE coordinates and plots for group separation assessment. NOT…
Disease Mechanism Evidence Map
by @aipoch
Systematically maps mechanism evidence for a disease from molecules to pathways, cell types, tissues, biological consequences, and clinical phenotypes. Always use this skill when a user needs a layered mechanism evidence chain…
Time Dependent Roc
by @aipoch
Use when performing time-dependent ROC curve analysis for survival data with follow-up time, event status, and a numeric marker. Supports CSV/TXT/TSV/Excel input, `risk_score` as the default marker unless `--marker_col` is…
Bulk Omics Integrative Planner
by @aipoch
Designs complete integrated research plans for bulk transcriptomics, proteomics, metabolomics, and related omics from a user-provided biomedical direction. Always use this skill whenever a user wants to design, scope, or…
Multi Database Literature Collector
by @aipoch
Collects candidate biomedical literature across multiple databases, adapts search logic by database, preserves source metadata, and organizes results into a structured, screening-ready candidate pool. Always use this skill when…
Evidence Level Ranker
by @aipoch
Ranks papers by evidence family, methodological quality tier, validation depth, and claim discipline; assigns anchor, context-setting, mechanistic support, or caution citation roles; prevents prestige-based or design-label-based…
Bidirectional Multi Phenotype Mr Research Planner
by @aipoch
Generates complete bidirectional multi-phenotype Mendelian randomization research designs from a user-provided exposure family and outcome family. Always use this skill whenever a user wants to design, plan, or build a…
Bioinformatics Translational Opportunity Finder
by @aipoch
Identifies translationally meaningful paths for bioinformatics findings by mapping omics or computational discoveries to diagnosis, stratification, prognosis, treatment-response, monitoring, or target-nomination use cases, while…
Biomarker Landscape Scanner
by @aipoch
Scans the biomarker landscape of a disease area by biomarker type, clinical/research use case, evidence layer, validation status, and maturity level. Use this skill when a user wants a field-level biomarker evidence map rather…
Active Comparator Single Soc Faers Safety Comparison
by @aipoch
Generates complete FAERS pharmacovigilance study designs for multi-drug or class-level safety comparison inside one predefined SOC or AE family using active comparators, disproportionality analysis, subgroup characterization,…
Basic Discovery Translational Opportunity Finder
by @aipoch
Finds translational opportunities that connect basic-research discoveries to clinically meaningful use cases such as diagnosis, stratification, prognosis, treatment response prediction, monitoring, or therapeutic development.…
Population Gap Detector
by @aipoch
Detects overlooked, underrepresented, weakly resolved, or poorly validated populations and subgroups within a biomedical research area so users can identify more precise and meaningful study populations. Always use this skill…
Contradictory Findings Resolver
by @aipoch
Explains why studies on the same biomedical topic reach different or opposing conclusions by auditing differences in population, endpoint definition, sample source, assay or platform, study design, statistical model, adjustment…
Method Gap Detector
by @aipoch
Detects methodological gaps across study design, analysis, validation, bias control, reproducibility, and implementation readiness within a biomedical research area. Use this skill when a user wants to identify what current…
Figure First Paper Reader
by @aipoch
Reads a paper figure by figure before re-integrating the full narrative, so the user can identify the core findings quickly and check whether each visual actually supports the authors' main claims. Always separate figure…
Result Reliability Checker
by @aipoch
Assesses whether study results are trustworthy by auditing design integrity, sample structure, statistical handling, bias control, validation chain, and claim discipline. It identifies where results are robust, fragile, overfit,…
High Value Paper Screener
by @aipoch
Quickly judges whether a biomedical paper is worth deep reading by screening for question fit, design quality, sample adequacy, methodological novelty, and reproducibility value.
Study Design Identifier
by @aipoch
Identifies the real underlying study design used in a medical or biomedical paper, distinguishes primary and secondary design components when papers are hybrid, and converts the paper into an evidence-aware design label suitable…
Preprint Surveillance Finder
by @aipoch
Tracks the latest preprints and emerging research topics related to your topic across bioRxiv, medRxiv, and arXiv. Use when a user wants to discover what is being published right now before it reaches journals, monitor…
Medical Research Gap Finder
by @aipoch
Identifies real, evidence-audited, topic-specific research gaps in medical research by first retrieving and verifying literature from trusted sources, then mapping the current evidence landscape, rejecting pseudo-gaps, and…
Case Control Study Planner
by @aipoch
Design a structured case-control study framework with explicit source population logic, control selection rules, matching decisions, exposure measurement planning, and bias-control checkpoints.
Mendel
by @aipoch
Gregor Mendel — genetics mentor, patient experimenter, and gardener-monk. Trigger this skill when users ask about genetics, heredity, inheritance patterns, Mendelian laws, dominant/recessive traits, gene segregation, independent…
Bianque
by @aipoch
Evidence-based medical knowledge and research mentor grounded in the Bian Que tradition. Covers clinical reasoning, diagnostic thinking (望闻问切), pharmacology, pathology, differential diagnosis, medical literature appraisal, and…
Biomedical Search Strategy Builder
by @aipoch
Builds professional search strategies for PubMed, Embase, Web of Science, and similar databases. Use when a user needs to construct a MeSH-based Boolean query, design a systematic review search, expand a concept with synonyms,…
Typeui Fundamentals
by @bergside
Universal UI/UX design principles covering visual hierarchy, interaction laws, typography foundations, and WCAG accessibility requirements. Use when making design decisions not covered by a specific design system, validating…
Typeui
by @bergside
Use TypeUI with Hermes Agent to access project design skills, brand kits, UI prompts, and layout variations through the TypeUI MCP server when creating or refining user interfaces.
Typeui
by @bergside
Use TypeUI with OpenClaw to access project design skills, brand kits, UI prompts, and layout variations through the TypeUI MCP server when creating or refining user interfaces.
Typeui
by @bergside
Use TypeUI with Grok to access project design skills, brand kits, UI prompts, and layout variations through the TypeUI MCP server when creating or refining user interfaces.
Setup
by @Shpigford
Get a new developer up and running with the Chops codebase — prerequisites, build, architecture, and common tasks.
Release
by @Shpigford
Determine the next version, update the marketing site, and run the full release pipeline.
Vss Benchmark Video Summarization
by @NVIDIA-AI-Blueprints
Benchmark a deployed LVS instance — set up test media, run single-file latency and burst-throughput tests, analyze GPU and latency metrics, and get configuration recommendations to improve performance.
Benchmark Video Search
by @NVIDIA-AI-Blueprints
Measure retrieval quality and latency of a deployed VSS search profile by ingesting a labelled dataset and running the vss CLI across retrieval paths. Use when the user asks to "benchmark video search", "compare search recall…
Rtvi Byom Porting
by @NVIDIA-AI-Blueprints
Use when adding, debugging, or validating a bring-your-own VLM in VSS RT-VLM, including custom Hugging Face or NGC checkpoints, vLLM adapters or plugins, model shims, and model-specific runtime dependencies. Not for selecting an…
Profile Vllm Performance
by @NVIDIA-AI-Blueprints
Profile vLLM and RT-VLM inference to identify and remove GPU-idle gaps, underfilled batches, transfer stalls, serialized multimodal work, scheduler gaps, or KV pressure. Use this skill when GPU utilization is unexpectedly low or…
Vss Benchmark Vlm Qa
by @NVIDIA-AI-Blueprints
Benchmark video Q&A accuracy and latency of a deployed RT-VLM (Cosmos Reason 3) via vss vlm run, using questions and videos from the DSS vss-devx-base dataset. Replaces the deprecated nat eval / vss-agent QA path. Not for…
Zhanglei Longterm Research Value
by @questflowai
Use when evaluating investments through Zhang Lei / Hillhouse Capital's long-term research-driven value lens: deep research, do time's friend, invest in great companies, and actively help them grow.
Yc Early Pmf
by @questflowai
Use when evaluating early-stage startups through a YC-style lens: talk to users, achieve product-market fit, grow simply, default alive, and avoid premature scaling.
Willy Woo Onchain
by @questflowai
Use when evaluating Bitcoin and crypto cycles through a Willy Woo-style on-chain lens: holder behavior, realized value, supply dynamics, and on-chain demand.
Microsoft Skill Creator
by @MicrosoftDocs
Create agent skills for Microsoft technologies using official documentation. Use whenever the user wants to build, generate, or scaffold a skill for any Microsoft technology (Azure, .NET, M365, VS Code, Bicep, etc.)—even phrased…
Microsoft Code Reference
by @MicrosoftDocs
Find working code samples, verify API signatures, and fix Microsoft SDK errors using official docs. Use whenever the user is writing, debugging, or reviewing code that touches any Microsoft SDK, .NET library, Azure client…
Microsoft Docs
by @MicrosoftDocs
Understand Microsoft technologies by querying official documentation. Use whenever the user asks how something works, wants tutorials, needs configuration options, limits, quotas, or best practices for any Microsoft technology…
Microsoft Learn Cli
by @MicrosoftDocs
Use the Microsoft Learn CLI to retrieve current official Microsoft documentation and code samples when Microsoft Learn MCP tools are unavailable. Use for questions about Microsoft technologies, SDKs, APIs, configuration, limits,…
Roc Diagnostic Performance
by @aipoch
Use when evaluating diagnostic biomarker performance from case-control expression data with logistic regression and ROC curves, exporting coefficient and AUC tables together with a ROC PDF. NOT for: survival analysis,…
Elastic Net Feature Selection
by @aipoch
Use when selecting predictive genes or other molecular features from bulk expression matrices for binary case-vs-control classification with elastic net logistic regression, including coefficient path and cross-validation plots.…
Rf Model Importance Analysis
by @aipoch
Use when you need a standardized R CLI workflow to train a two-class random forest model from an expression-like feature matrix, rank variable importance, and generate reproducible error and importance plots. NOT for regression…
Nomogram Construction
by @aipoch
Use when constructing a prognosis nomogram from survival-related clinical predictors, exporting the nomogram bundle and C-index table, and optionally rendering the final nomogram PDF. NOT for: univariate/multivariable Cox…
Lasso Logistics Analysis
by @aipoch
Use when building a binary classification model from an expression matrix or other omics feature matrix with LASSO logistic regression, cross-validation, and coefficient path visualization. NOT for: multiclass classification,…
Cibersort Immune Infiltration Analysis
by @aipoch
Use when estimating relative immune cell infiltration from a bulk expression matrix with a CIBERSORT-style nu-SVR deconvolution workflow based on an LM22 signature matrix, comparing one case group against one control group, and…
Consensus Clustering Analysis
by @aipoch
Use when identifying stable sample subtypes from bulk expression matrices with ConsensusClusterPlus, including PAC-based model selection and consensus matrix/CDF visualization. NOT for: differential expression analysis,…
Immune Pathway Analysis
by @aipoch
Run immune pathway GSVA or ssGSEA analysis from a bulk expression matrix, a sample group file, and a local immune Reactome gene-set table, then export differential pathway results and a heatmap for two-group comparison.
Hierarchical Clustering Plot
by @aipoch
Use when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample similarity assessment. Trigger keywords: hierarchical…
External Model Validation
by @aipoch
Use when validating an existing prognostic risk signature on an external bulk expression cohort with survival outcomes, producing risk scores, Kaplan-Meier curves, risk distribution plots, heatmap, and time-dependent ROC curves.…
Batch Effect Correction
by @aipoch
Use when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after QC plots. NOT for: single-cell integration, raw…
Gsva Analysis And Visualization
by @aipoch
Use this skill to run GSVA or ssGSEA pathway-level differential analysis from a bulk expression matrix and a sample group file, then generate a heatmap from the saved GSVA result object. Trigger keywords: GSVA, ssGSEA, pathway…
Ssgsea Immune Infiltration Analysis
by @aipoch
Use when estimating immune infiltration from bulk RNA-seq expression matrices with ssGSEA/GSVA, comparing case versus control groups, and generating downstream immune-score visualizations. NOT for single-cell RNA-seq, absolute…
Estimate Immune Score Analysis
by @aipoch
Use this skill to compute ESTIMATE immune-related microenvironment scores from a bulk expression matrix, generate an ESTIMATE score heatmap, and optionally generate group-wise ESTIMATE score boxplots plus significance tables…
Gene Protein Expression Matrix Normalization
by @aipoch
Use when normalizing bulk gene or protein expression matrices with log2 transform, z-score standardization, or min-max scaling before downstream visualization or exploratory analysis. NOT for count-model normalization such as…
Knn Imputation
by @aipoch
Use when filtering genes with high missingness and then imputing missing values in a bulk expression matrix with group-aware KNN through DMwR2, where donor samples are restricted by one annotation column before imputation. For…
Deg Screening Analysis
by @aipoch
Use when screening differentially expressed genes from a bulk expression matrix between two user-specified groups, producing DEG tables, a volcano plot, and a clustered heatmap. Triggers include DEG analysis, volcano plot,…
Km Survival Curve
by @aipoch
Use when generating Kaplan-Meier survival curves from tabular survival data containing time, event status, and a precomputed risk group. Supports command-line parameter input, parameter validation, automatic time-unit handling,…
Differential Expression Analysis
by @aipoch
Use when analyzing bulk RNA-seq or microarray expression data to identify differentially expressed genes between two biological groups (case vs control), with volcano plots and heatmap visualization. NOT for:single-cell RNA-seq,…
Decision Curve Analysis
by @aipoch
Use when evaluating the clinical utility of a binary prediction model from a single clinical CSV file by fitting a logistic decision-curve model, plotting decision and clinical-impact curves, and exporting summary outputs. NOT…
Model Calibration Curve
by @aipoch
Use when assessing how well a survival model's predicted probabilities agree with observed outcomes by fitting a Cox model and generating bootstrap calibration curves at one or more prediction horizons from a clinical CSV file.…
Sample Group Sankey Plot
by @aipoch
Use when generating Sankey or alluvial plots from sample annotation tables where rows are samples and selected columns are categorical stages such as risk group, response status, subtype, or cohort labels. NOT for: gene network…
Xgboost Analysis
by @aipoch
Use when building XGBoost models on tabular data and returning feature importance ranking outputs. Supports binary classification and regression with automatic task detection, train-test split, performance tables, feature…
Sample Correlation Analysis
by @aipoch
Use when performing correlation analysis between two variables including Pearson and Spearman correlation methods. Supports command-line parameter input, automatic data format detection, parameter validation, result directory…
Decision Tree Analysis
by @aipoch
Use when building a decision tree model in R and generating feature importance ranking outputs. Supports classification and regression, automatic task detection, parameter validation, model evaluation summaries, and exports of…
Pca Dimensionality Reduction
by @aipoch
Use when performing PCA principal component dimensionality reduction on tabular numeric data. Supports command-line parameter input, automatic numeric feature selection, parameter validation, result directory creation, and CSV…
Gokegg Analysis
by @aipoch
Use when performing GO and KEGG enrichment on a gene list from bulk RNA-seq or microarray studies, then generating a combined GO/KEGG dot chart. NOT for single-cell RNA-seq, methylation data, or non-expression data.
Introduction Section Writer
by @aipoch
Writes the full Introduction section of a biomedical manuscript based on an approved or sufficiently clear study logic, while preserving evidence boundaries and introduction discipline.
Lightgbm Analysis
by @aipoch
Use when training a LightGBM model on tabular data in R and returning model metrics, feature importance ranking tables, and feature importance plots.
Gsea
by @aipoch
Run GSEA on a ranked gene list and produce the enrichment table, running-score table, and enrichment plots.
Arxiv Preflight
by @aipoch
Run a submission-readiness preflight on a manuscript before arXiv upload. Use when the user is preparing an arXiv submission, asks to check a paper before uploading, mentions hallucinated or fake references, leftover LLM…
Graphical Abstract Generator
by @aipoch
Converts a biomedical study storyline into a graphical abstract and, when direct image capability is available, generates the graphical abstract directly; otherwise it falls back to prompts, Mermaid flowcharts, or…
Results Section Writer
by @aipoch
Writes the full Results section of a biomedical manuscript from a sufficiently clear result structure, figure inventory, or analysis summary while preserving evidence boundaries and result hierarchy.
Consistency Checker Across Manuscript
by @aipoch
Checks consistency across title, abstract, methods, results, figures, tables, and supplements to identify internal contradictions and version drift in biomedical manuscripts.
Table Narrative Writer
by @aipoch
Converts biomedical table content into clear manuscript or presentation narrative by prioritizing meaningful patterns, contrasts, and interpretation boundaries rather than restating every number.
Revision Strategy Planner
by @aipoch
Builds prioritized manuscript revision plans for major or minor revisions by separating comments that require experiments, analyses, clarification, restructuring, or wording changes.
Reporting Guideline Compliance Checker
by @aipoch
Checks biomedical manuscripts against reporting guidelines such as CONSORT, STROBE, PRISMA, and TRIPOD to identify missing or weak reporting elements before submission or revision.
Latex Manuscript Format Converter
by @aipoch
Converts existing manuscript content into LaTeX format aligned with a target journal, conference, or template while preserving manuscript meaning and structural integrity.
Results Section Structurer
by @aipoch
Organizes biomedical figures, analyses, and result blocks into a clear Results section structure with disciplined narrative ordering and evidence-aware presentation.
Author Response Builder
by @aipoch
Turns reviewer comments into structured, professional point-by-point responses linked to manuscript revisions, clarifications, rebuttals, and additional analyses.
Reference Integrity Checker
by @aipoch
Checks whether manuscript references are accurately matched to claims, appropriately scoped, and not overextended, misquoted, or second-hand cited.
Slide Deck For Lab Meeting
by @aipoch
Structures research progress into focused and actionable slides for lab meetings or project reviews without inventing missing content.
Medical English Precision Editor
by @aipoch
Improves medical English precision without changing the underlying facts, evidence boundaries, or intended scientific meaning.
Claim Strength Calibrator
by @aipoch
Calibrates manuscript claim strength so wording matches the actual evidence level, study design, and validation status.
Grant Specific Aims Writer
by @aipoch
Writes Specific Aims pages for grant applications. Use when drafting or revising the Specific Aims page (NIH R01/R21/R03), NSF Project Summary, or equivalent for any major funding agency. Also triggers on "write my specific…
Introduction Logic Builder
by @aipoch
Builds background-gap-objective logic for biomedical manuscript introductions with clear study positioning and disciplined narrative structure.
Target Journal Matcher
by @aipoch
Matches your study to appropriate journals based on topic, design, and evidence strength. Use when deciding where to submit a manuscript, comparing journal options by impact factor vs scope fit vs method tolerance, or finding a…
Title And Abstract Optimizer
by @aipoch
Optimizes manuscript titles and abstracts for information density, factual accuracy, and submission fit in biomedical research writing.
Figure Legend Writer
by @aipoch
Writes complete, publication-grade figure legends that can stand on their own. Use when writing or revising figure legends for any scientific figure — bar charts, line graphs, scatter plots, box plots, heatmaps, survival curves,…
Methods Section Writer
by @aipoch
Turns your protocol and analysis workflow into publication-ready Methods text. Use when writing or revising the Methods section of a biomedical manuscript, ensuring it complies with reporting guidelines (CONSORT, STROBE, PRISMA,…
Lay Summary For Cross Disciplinary Teams
by @aipoch
Rewrites technical research content into a structured lay summary that cross-disciplinary teams can quickly understand and act on. Use when the user wants to explain research to colleagues outside their specialty — clinicians,…
Limitation And Risk Writer
by @aipoch
Acknowledges limitations in sample, design, measurement, and validation in a professional way that improves credibility without undermining the whole paper. Use when writing the limitations paragraph of a Discussion section,…
Discussion Composer
by @aipoch
Composes a Discussion around key findings, mechanisms, clinical relevance, and limitations. Use when writing or improving a Discussion section for any biomedical manuscript — including interpreting results, connecting to prior…
Conference Abstract Writer
by @aipoch
Condenses a full study into conference-submission abstract format. Use when adapting a manuscript abstract or study summary to meet a specific conference's word limit, structured format (Background/Methods/Results/Conclusion),…
Poster Storyline Builder
by @aipoch
Reorganizes a paper into a storyline suitable for scientific posters. Use when planning the section structure, title hierarchy, figure selection, and live-explanation flow for an academic conference poster. Also triggers on…
Cover Letter Drafter
by @aipoch
Drafts journal-ready cover letters for manuscript submission. Use when preparing a submission package, communicating the manuscript's contributions and journal fit to editors, or tailoring the novelty framing for a specific…