Data Analysis AI agent skills

2,858 skills in the archive. Read a skill’s instructions or open its original repository.

• Netneurotools Guide

  by @NeuroAIHub

  Domain-validated guidance for network neuroscience analysis using netneurotools: datasets, brain network metrics, connectivity consensus, modularity, spatial statistics, null models, and cortical surface visualization. Use this…

• Curate Research Trace

  by @NeuroAIHub

  Curate BrainPilot Trace Events into human-readable research Episodes, appropriately granular nodes, and direct depends_on relationships. Use when a report contains multiple settings, results, analyses, visualizations, findings,…

• Research Literacy

  by @NeuroAIHub

  Core scientific methodology principles: research planning, method justification, assumption checking, and human-in-the-loop decision making for cognitive science and neuroscience

• Audit Data Integrity

  by @NeuroAIHub

  Audit scientific data semantics, sample and label alignment, leakage, group splits, preprocessing boundaries, and train-to-inference transforms. Use for any result based on datasets, feature matrices, tensors, repeated…

• Create Data Inventory

  by @NeuroAIHub

  Create or update the canonical Markdown inventory of task-relevant research data. Engineer must invoke this skill before creating or updating any data inventory, data contract, or dataset-coverage summary that downstream agents…

• Source Grounded Research Report

  by @NeuroAIHub

  Research a bounded factual, documentation, API, or literature question from authoritative sources and save a self-contained Markdown report with claim-level citations. Use for reading-heavy evidence gathering, not experiment…

• Cc Java Dev

  by @doccker

  Java 开发规范，包含命名约定、异常处理、Spring Boot 最佳实践等

• Java Dev

  by @doccker

  Java 开发规范，包含命名约定、异常处理、Spring Boot 最佳实践等

• Data Auditor Cleaner

  by @zhnnky329

  Map contest attachments to subquestions, audit and clean raw data, and emit one reusable data profile with quality, coverage, imbalance, concentration, and method-readiness evidence for downstream risk screening.

• Result Report Generator

  by @zhnnky329

  Summarize modeling experiment evidence, compare the approved main method with a usable baseline, surface fallback triggers, and produce a decision-point or final report without creating routine per-round prose.

• Matlab Model Code Generator

  by @zhnnky329

  Generate and run minimal reproducible MATLAB or Beita Tianyuan compatible code for the human-approved main method and usable baseline, with compact experiment artifacts and a canonical run summary.

• Solution Package Builder

  by @zhnnky329

  Assemble a submission-ready writer package from final method, result, robustness, figure, and human-decision artifacts, then freeze approved numerical claims with provenance.

• Compare Screenshots

  by @dzhng

  Compare screenshots against the intended design, distinguishing approved references from historical baselines. Use for iterative implementation matching, before/after visual review, objective image telemetry, or checking a lone…

• Screenshot Critique

  by @dzhng

  Use the unprimed sub agent as a second set of eyes before accepting visual work — MANDATORY before declaring any user-reported visual bug fixed or claiming a visual change verified; primed eyes pass defects fresh eyes catch.

• Tooluniverse Variant Analysis

  by @wu-yc

  Production-ready VCF processing, variant annotation, mutation analysis, and structural variant (SV/CNV) interpretation for bioinformatics questions. Parses VCF files (streaming, large files), classifies mutation types (missense,…

• Tooluniverse Single Cell

  by @wu-yc

  Production-ready single-cell and expression matrix analysis using scanpy, anndata, and scipy. Performs scRNA-seq QC, normalization, PCA, UMAP, Leiden/Louvain clustering, differential expression (Wilcoxon, t-test, DESeq2), cell…

• Tooluniverse Spatial Omics Analysis

  by @wu-yc

  Computational analysis framework for spatial multi-omics data integration. Given spatially variable genes (SVGs), spatial domain annotations, tissue type, and disease context from spatial transcriptomics/proteomics experiments…

• Tooluniverse Epigenomics

  by @wu-yc

  Production-ready genomics and epigenomics data processing for BixBench questions. Handles methylation array analysis (CpG filtering, differential methylation, age-related CpG detection, chromosome-level density), ChIP-seq peak…

• Tooluniverse Phylogenetics

  by @wu-yc

  Production-ready phylogenetics and sequence analysis skill for alignment processing, tree analysis, and evolutionary metrics. Computes treeness, RCV, treeness/RCV, parsimony informative sites, evolutionary rate, DVMC, tree…

• Tooluniverse Multi Omics Integration

  by @wu-yc

  Integrate and analyze multiple omics datasets (transcriptomics, proteomics, epigenomics, genomics, metabolomics) for systems biology and precision medicine. Performs cross-omics correlation, multi-omics clustering (MOFA+, NMF),…

• Tooluniverse Spatial Transcriptomics

  by @wu-yc

  Analyze spatial transcriptomics data to map gene expression in tissue architecture. Supports 10x Visium, MERFISH, seqFISH, Slide-seq, and imaging-based platforms. Performs spatial clustering, domain identification, cell-cell…

• Tooluniverse Gene Enrichment

  by @wu-yc

  Perform comprehensive gene enrichment and pathway analysis using gseapy (ORA and GSEA), PANTHER, STRING, Reactome, and 40+ ToolUniverse tools. Supports GO enrichment (BP, MF, CC), KEGG, Reactome, WikiPathways, MSigDB Hallmark,…

• Tooluniverse Metabolomics Analysis

  by @wu-yc

  Analyze metabolomics data including metabolite identification, quantification, pathway analysis, and metabolic flux. Processes LC-MS, GC-MS, NMR data from targeted and untargeted experiments. Performs normalization, statistical…

• Tooluniverse Proteomics Analysis

  by @wu-yc

  Analyze mass spectrometry proteomics data including protein quantification, differential expression, post-translational modifications (PTMs), and protein-protein interactions. Processes MaxQuant, Spectronaut, DIA-NN, and other…

• Tooluniverse Rnaseq Deseq2

  by @wu-yc

  Production-ready RNA-seq differential expression analysis using PyDESeq2. Performs DESeq2 normalization, dispersion estimation, Wald testing, LFC shrinkage, and result filtering. Handles multi-factor designs, multiple contrasts,…

• Tooluniverse Crispr Screen Analysis

  by @wu-yc

  Comprehensive CRISPR screen analysis for functional genomics. Analyze pooled or arrayed CRISPR screens (knockout, activation, interference) to identify essential genes, synthetic lethal interactions, and drug targets. Perform…

• Tooluniverse Metabolomics

  by @wu-yc

  Comprehensive metabolomics research skill for identifying metabolites, analyzing studies, and searching metabolomics databases. Integrates HMDB (220k+ metabolites), MetaboLights, Metabolomics Workbench, and PubChem. Use when…

• Tooluniverse Polygenic Risk Score

  by @wu-yc

  Build and interpret polygenic risk scores (PRS) for complex diseases using GWAS summary statistics. Calculates genetic risk profiles, interprets PRS percentiles, and assesses disease predisposition across conditions including…

• Tooluniverse Immune Repertoire Analysis

  by @wu-yc

  Comprehensive immune repertoire analysis for T-cell and B-cell receptor sequencing data. Analyze TCR/BCR repertoires to assess clonality, diversity, V(D)J gene usage, CDR3 characteristics, convergence, and predict epitope…

• Scikit Survival

  by @wu-yc

  Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitting Cox models, Random…

• Generate Cell Analysis Charts

  by @wu-yc

  Domain-specialized chart generator for cell biology video analysis outputs. Consumes structured JSON from analyze_lab_video_cell_behavior or compatible sources and produces publication-ready figures — growth curves, cell…

• Protein Interaction Network Analysis

  by @wu-yc

  Analyze protein-protein interaction networks using STRING, BioGRID, and SASBDB databases. Maps protein identifiers, retrieves interaction networks with confidence scores, performs functional enrichment analysis…

• Tooluniverse Gwas Study Explorer

  by @wu-yc

  Compare GWAS studies, perform meta-analyses, and assess replication across cohorts. Integrates NHGRI-EBI GWAS Catalog and Open Targets Genetics to compare study designs, effect sizes, ancestry diversity, and heterogeneity…

• Geniml

  by @wu-yc

  This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus…

• Detect Common Wetlab Errors

  by @wu-yc

  Detects common wet-lab procedural and safety errors from XR or fixed-camera lab video. Identifies pipette volume deviations, forgotten reagent additions, uncapped tubes, contamination risks, sample mix-ups, and other observable…

• Analyze Lab Video Cell Behavior

  by @wu-yc

  Automated cell behavior analysis from microscopy or XR lab recordings. Classifies cell motion phenotypes (migration, proliferation, apoptosis, division, quiescence), computes population-level quantitative metrics (growth rate,…

• Export Experiment Data To Excel

  by @wu-yc

  Exports any structured experimental data (JSON, tables, time series) to well-formatted Excel (.xlsx) files. Auto-names sheets (Raw Data, Growth Curves, Cell Counts, etc.), adds unit headers and annotation rows, applies…

• Pyopenms

  by @wu-yc

  Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide identification, protein quantification, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. Best…

• Dask

  by @wu-yc

  Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with…

• Scanpy

  by @wu-yc

  Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with…

• Cellxgene Census

  by @wu-yc

  Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas…

• Omero Integration

  by @wu-yc

  Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.

• Hmdb Database

  by @wu-yc

  Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.

• Scikit Bio

  by @wu-yc

  Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.

• Umap Learn

  by @wu-yc

  UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HDBSCAN), supervised/parametric UMAP, for high-dimensional data.

• Flowio

  by @wu-yc

  Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.

• Reactome Database

  by @wu-yc

  Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

• Pysam

  by @wu-yc

  Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.

• Pydeseq2

  by @wu-yc

  Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.

• Platform Salesforce Connect Adapter Generate

  by @forcedotcom

  Custom Apex adapter generation for Salesforce Connect — connects any external REST API to Salesforce as live, queryable External Objects without ETL or copying. TRIGGER when: connecting a non-standard external API, writing a…

• Dx App Analytics Query

  by @forcedotcom

  ISV App Analytics metadata types — AppAnalyticsQueryRequest and AppAnalyticsSettings. Use this skill when the user asks about retrieving managed package usage data, configuring App Analytics simulation mode, querying subscriber…

• Analytics Tracking

  by @LeoYeAI

  When the user wants to set up, improve, or audit analytics tracking and measurement. Also use when the user mentions "set up tracking," "GA4," "Google Analytics," "conversion tracking," "event tracking," "UTM parameters," "tag…

• Onboarding Cro

  by @LeoYeAI

  When the user wants to optimize post-signup onboarding, user activation, first-run experience, or time-to-value. Also use when the user mentions "onboarding flow," "activation rate," "user activation," "first-run experience,"…

• I18n Parity

  by @hoangsonww

  MANDATORY for every coding agent and contributor touching localized content — keep all five localization surfaces (dashboard UI keys, wiki page, mirrored READMEs, locale-aware formatting, language switchers) in parity across…

• Mcp Operations

  by @hoangsonww

  Operate and maintain the local MCP server for this project. Use when creating MCP host config, troubleshooting tool connectivity, modifying tool domains, or adjusting safety policy flags.

• Mcp Maintainer

  by @hoangsonww

  Operate and maintain the local MCP server for this repository. Use for MCP tool updates, policy-guard changes, host configuration, and MCP runtime troubleshooting.

• Model Mix

  by @hoangsonww

  Break down Claude Code usage by model family (Opus / Sonnet / Haiku) from the Agent Monitor dashboard — each family's share of tokens, share of cost, and the spots where an expensive model is doing cheap work. Pulls per-model…

• Cache Efficiency

  by @hoangsonww

  Analyze prompt-cache effectiveness for Claude Code usage from the Agent Monitor dashboard — cache hit rate (total_cache_read / (total_cache_read + total_input)), cache_write vs cache_read reuse, cache-read vs cache-write spend,…

• Anomaly Alert

  by @hoangsonww

  Identify anomalous sessions using Agent Monitor data — cost outliers from the pricing engine, token anomalies (cache miss spikes, compaction baseline surges), unusual event type ratios (PreToolUse/PostToolUse gaps, APIError…

• Config Audit

  by @hoangsonww

  Run a full audit of the user's Claude Code configuration via the Agent Monitor Config Explorer API: counts per surface (user vs project), duplicate or overlapping skills and subagents, hooks that run shell commands, and which…

• Regression Watch

  by @hoangsonww

  Detect quality and efficiency regressions over time using Agent Monitor data — rising error rate (APIError events), falling cache hit rate, growing compaction frequency, and climbing cost-per-session. Splits history into an…

• Model Savings

  by @hoangsonww

  Estimate the dollars saved by routing eligible Claude Code work to a cheaper model family, using the Agent Monitor pricing engine. Re-prices each model's token mix at the target family's rates and quantifies the delta. Uses…

• Memory Review

  by @hoangsonww

  Review the file-based memory store via the Agent Monitor Config Explorer API: the user and project CLAUDE.md plus per-project auto-memory files under ~/.claude/projects/<slug>/memory/*.md. Groups by project, shows the index…

• Session Search

  by @hoangsonww

  Find Claude Code sessions tracked by the Agent Monitor by project (cwd), model, status, or date, then rank the matches by cost or recency. Pulls the session list and the distinct cwd / facet values so filters use real values…

• Delegation Audit

  by @hoangsonww

  Audit model delegation and subagent effectiveness for a session — which models handled which subagent types, per-type success rates and average durations, and wasted delegations (heavy models on trivial work or types that…

• Session Report

  by @hoangsonww

  Generate a comprehensive session report with per-model token usage (input, output, cache_read, cache_write including compaction baselines), cost breakdown via the pricing engine, tool invocations, agent hierarchy, compaction…

• Regression Alert

  by @hoangsonww

  Compare this period's reliability against the prior period using Agent Monitor data — error rate (APIError/total) and tool-failure rate (PreToolUse→PostToolUse gap) — flag any regression where reliability got worse, and…

• Fleet Runs

  by @hoangsonww

  Summarize Workflow-tool fleet runs from the Agent Monitor — these fleets emit no hooks and are ingested from on-disk run journals. List recent runs with status and agents-per-run, then drill into a single run's per-agent detail.…

• Time Of Day

  by @hoangsonww

  Discover when you are most active and most productive with Claude Code by bucketing sessions and events into hour-of-day and day-of-week bins from their timestamps, then flagging peak versus low-output windows. Uses the session…

• Benchmark

  by @hoangsonww

  Benchmark one session (or a small recent set) against the rolling average using Agent Monitor data — cost, total tokens, tool count, and workflow complexity score — and report where each metric lands as a percentile of the…

• Error Propagation

  by @hoangsonww

  Trace error propagation through a multi-agent session by agent depth — where failures originated, the depth at which they appeared, and how they cascaded up to parent agents — using the Agent Monitor workflow intelligence API…

• Spend Forecast

  by @hoangsonww

  Forecast Claude Code spend to the end of the week or month from the daily session trend on the Agent Monitor dashboard — moving average of daily spend × days remaining, added to spend-to-date. Uses /api/analytics daily_sessions,…

• Concurrency Report

  by @hoangsonww

  Report concurrency and parallelism for a session — how many agents ran in parallel, concurrency-lane utilization, peak parallel width, and serialization bottlenecks (sequential chains that could have run as parallel lanes) —…

• Productivity Score

  by @hoangsonww

  Calculate a productivity score using actual Agent Monitor metrics — session completion rates, cache efficiency (cache_read vs input), compaction pressure (baseline tokens), turn velocity (turn_count / total_turn_duration_ms),…

• Transcript Grep

  by @hoangsonww

  Search a Claude Code session transcript for a string or regex pattern and show every matching message with surrounding context. Reads /api/sessions/:id/transcript and resolves sessions via /api/sessions?limit= from the Agent…

• Slo Check

  by @hoangsonww

  Define and check simple service-level objectives for Claude Code from Agent Monitor data — session completion rate, tool success rate (PostToolUse/PreToolUse), and error rate (APIError/total) — then compare each to its target…

• Api Error Report

  by @hoangsonww

  Produce a detailed report on APIError events from Agent Monitor data — counts over time, which sessions and models are affected, and the likely root cause (rate limits, overload/529, or context-window pressure) inferred from…

• Hook Failure Audit

  by @hoangsonww

  Audit hook delivery health from Agent Monitor data — balance PreToolUse vs PostToolUse (a gap means tools that started but never reported back), detect missing Stop/SubagentStop terminators (sessions/subagents that never…

• Workflow Optimizer

  by @hoangsonww

  Analyze workflow patterns using the Agent Monitor's workflow intelligence API — orchestration DAGs, tool flow transitions, subagent effectiveness, model delegation patterns, error propagation by depth, concurrency lanes,…

• Session Timeline

  by @hoangsonww

  Render an ordered timeline of one Claude Code session's events (every event type) with per-event durations and tool names, reconstructed from Agent Monitor data. Pairs PreToolUse with PostToolUse to compute tool durations and…

• Error Scan

  by @hoangsonww

  Scan recent Claude Code activity for errors and failure signals across all sessions using Agent Monitor data — APIError events and PreToolUse→PostToolUse gaps (tools that started but never completed) — then group failures by…

• Pattern Detect

  by @hoangsonww

  Detect recurring patterns using the Agent Monitor's workflow intelligence — toolFlow transitions (tool A → B frequency matrices), recurring workflow patterns, agent co-occurrence pairs, model delegation habits, error propagation…

• Mcp Server

  by @hoangsonww

  Configure, launch, validate, and troubleshoot CCAM's comprehensive MCP server for Claude Code, Codex, and other MCP hosts. Use when installing dependencies, building the server, selecting stdio, HTTP, or REPL transport, setting…

• Skill Inventory

  by @hoangsonww

  Inventory the installed skills and which plugins contribute them, then flag overlap with the user's own skills — read through the Agent Monitor Config Explorer API. Reads /api/cc-config/skills and /api/cc-config/plugins. Use…

• Hook Inventory

  by @hoangsonww

  Inventory hooks across the user, project, and project-local settings plus the ~/.claude/hooks scripts directory — read through the Agent Monitor Config Explorer API — and flag hooks that POST to the network or run arbitrary…

• Transcript Replay

  by @hoangsonww

  Walk a Claude Code session transcript turn-by-turn from Agent Monitor data, summarizing each user, assistant, and tool message in order so a long conversation can be reviewed quickly. Anchors the recap to the session header…

• Dag Map

  by @hoangsonww

  Render the multi-agent orchestration DAG for a session — parent→child subagent edges, tree depth, and fan-out — from the Agent Monitor workflow intelligence API. Cross-checks the orchestration dataset against the raw agent…

• Endpoint Probe

  by @hoangsonww

  Probes each major Agent Monitor API route — /api/stats, /api/analytics, /api/sessions, /api/pricing/cost, /api/workflows/runs, /api/cc-config/overview — and reports each one's HTTP status, latency, and response shape, flagging…

• History Portability

  by @hoangsonww

  Import Claude Code or Codex history and move complete CCAM datasets between machines. Use when rescanning provider history, importing a copied directory, uploading JSONL or archives, exporting a backup, restoring it…

• Live Watch

  by @hoangsonww

  Polls the Agent Monitor /api/stats endpoint several times over a short window and reports the live deltas in active_sessions, active_agents, events_today, and ws_connections so you can see activity moving in real time. Use when…

• Sprint Summary

  by @hoangsonww

  Summarize a sprint's worth of Claude Code activity — sessions grouped by project (cwd), per-model cost breakdown, token efficiency (cache hit rate, compaction baselines), subagent effectiveness from workflow API, velocity…

• Weekly Report

  by @hoangsonww

  Compile a weekly productivity report using Agent Monitor data — daily_sessions and daily_events trends, per-session costs from pricing engine, token volumes (input/output/cache_read/cache_write + baselines), tool usage top 20,…

• Cost Breakdown

  by @hoangsonww

  Break down Claude Code costs using the Agent Monitor pricing engine. Shows per-model costs (input, output, cache_read, cache_write at $/Mtok rates), per-session costs, daily trends, and compaction baseline token recovery. Use…

• Daily Standup

  by @hoangsonww

  Generate a daily standup summary from recent Claude Code sessions — completed work grouped by project (cwd), session costs from the pricing engine, tool invocations, error/compaction/APIError events, and turn velocity metrics…

• Cwd Rollup

  by @hoangsonww

  Roll up Claude Code sessions by working directory (project) from Agent Monitor data — session count, total cost, total tokens, and last-active timestamp per cwd — so per-project activity can be compared at a glance. Use when…

• Quick Stats

  by @hoangsonww

  One-line summary of key Agent Monitor metrics — active sessions, total cost from the pricing engine, events today from daily_events, top tool from tool_usage, and current model from the most recent session. Use for a fast…

• Usage Trends

  by @hoangsonww

  Analyze Claude Code usage trends over time using the Agent Monitor's analytics API — daily session counts, daily event counts, token volumes by type, model distribution, tool usage rankings, and agent/event type distributions…

• Workflow Report

  by @hoangsonww

  Create a workflow-intelligence report from CCAM orchestration, delegation, tool flow, concurrency, complexity, compaction, and fleet-run data. Use for architecture reviews, agent-fleet analysis, or workflow optimization reports.

• Executive Report

  by @hoangsonww

  Generate a concise stakeholder report from CCAM sessions, analytics, cost, alerts, and workflow intelligence. Use for release summaries, leadership updates, operational reviews, or a scoped Markdown report with evidence.

• Optimization Suggest

  by @hoangsonww

  Suggest concrete optimizations for Claude Code usage based on historical session data. Covers cost reduction, speed improvement, error prevention, and workflow efficiency. Use for data-driven optimization planning.