Data Analysis AI agent skills

2,858 skills in the archive. Read a skill’s instructions or open its original repository.

• Cellprofiler

  by @K-Dense-AI

  Runs reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports image/channel manifests, headless batch execution, segmentation overlays, and…

• Medchem

  by @K-Dense-AI

  Applies medicinal chemistry filters for compound triage, using drug-likeness rules (Lipinski, Veber, CNS), structural alert catalogs (PAINS, NIBR, ChEMBL), complexity metrics, and the medchem query language for library filtering.

• Molecular Dynamics

  by @K-Dense-AI

  Runs and analyzes molecular dynamics simulations with OpenMM and MDAnalysis. Sets up protein/small molecule systems, defines force fields, runs energy minimization and production MD, and analyzes trajectories (RMSD, RMSF,…

• Agent Observability

  by @sickn33

  Instrument AI agents with tracing, token metrics, latency, and cost visibility. Use for reliability and debugging.

• Advanced Analytics Dashboard

  by @sickn33

  Dashboard metric register: metric, source module, formula, period, value, target, trend, owner and last-updated, as CSV, SQL, JSON Schema or Notion on request. Use for KPI dashboards.

• Ai Sre Incident Response

  by @sickn33

  Build AI-focused SRE incident response practices for LLM outages, degraded quality, runaway cost events, and safety regressions.

• Agenttrace Session Audit

  by @sickn33

  Audit local AI coding-agent sessions with agenttrace for cost, tool failures, latency, anomalies, health, diffs, and CI gates.

• Ai Security Hardening

  by @sickn33

  Harden AI/LLM deployments against prompt injection, data exfiltration, model theft, and supply chain attacks.

• Ai Analyzer

  by @sickn33

  AI驱动的综合健康分析系统，整合多维度健康数据、识别异常模式、预测健康风险、提供个性化建议。支持智能问答和AI健康报告生成。

• Adhx

  by @sickn33

  Fetch any X/Twitter post as clean LLM-friendly JSON. Converts x.com, twitter.com, or adhx.com links into structured data with full article content, author info, and engagement metrics. No scraping or browser required.

• Ab Test Setup

  by @sickn33

  Use when designing an A/B or split test: define the hypothesis, control and variants, estimate sample size, verify tracking, and predeclare metrics and stopping rules.

• Ad Campaign Analyzer

  by @sickn33

  Analyze cross-channel campaign data, quantify uncertainty, and propose evidence-labeled budget tests without overstating causality.

• Agent Memory Mcp

  by @sickn33

  A hybrid memory system that provides persistent, searchable knowledge management for AI agents (Architecture, Patterns, Decisions).

• Agent Memory

  by @sickn33

  A hybrid memory system that provides persistent, searchable knowledge management for AI agents.

• Database Lookup

  by @K-Dense-AI

  Query documented public database APIs with explicit endpoints, filters, pagination, and provenance. Use when a scientific, regulatory, financial, or other database-backed fact must be retrieved reproducibly from a named source…

• Clinical Reports

  by @K-Dense-AI

  Create safety-bounded draft structures and run local deterministic checks for clinical case, diagnostic, trial, safety, and aggregate research reports. Use only with synthetic, de-identified, or aggregate inputs and verified…

• Iso Standards Readiness

  by @K-Dense-AI

  Prepares and structurally reviews readiness evidence for ISO management-system and laboratory-competence standards - ISO 13485 medical device QMS, ISO 14971 device risk management, ISO/IEC 17025 testing and calibration…

• Hypothesis Generation

  by @K-Dense-AI

  Formulate evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating predictions, measurements, and preregistration-ready analysis plans. Use when turning…

• Clinical Decision Support

  by @K-Dense-AI

  Prepare and validate research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governance artifacts. Use for aggregate or synthetic research documentation and…

• Exploratory Data Analysis

  by @K-Dense-AI

  Perform bounded, local exploratory analysis of explicitly supported scientific files. Use for redacted CSV/TSV/JSON profiles; optional NumPy, HDF5, FASTA/FASTQ, and basic image metadata inspection; missingness/leakage audits;…

• Citation Management

  by @K-Dense-AI

  Comprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be…

• Ginkgo Cloud Lab

  by @K-Dense-AI

  Submit and manage protocols on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio), a web-based interface for autonomous lab execution on Reconfigurable Automation Carts (RACs). Use when the user wants to run protein expression and…

• Hypogenic

  by @K-Dense-AI

  Plans and audits use of ChicagoHAI HypoGeniC/HypoRefine for LLM-assisted hypothesis generation from labeled text datasets. Use for the `hypogenic` package, its task configs, hypothesis banks, or HypoBench datasets—not for manual…

• Analytical Method Validation

  by @K-Dense-AI

  Plan, execute, and document validation, verification, and transfer of analytical procedures under the governing framework - ICH Q2(R2) and Q14, USP <1220>/<1225>/<1226>, ICH M10 bioanalytical, CLSI EP, or ISO/IEC 17025. Use for…

• Fluidsim

  by @K-Dense-AI

  Plan, configure, inspect, restart, and analyze bounded FluidSim computational-fluid-dynamics simulations with explicit numerical-validity and HPC safety checks. Use for FluidSim solver selection, parameter review, FFT/MPI setup,…

• Geomaster

  by @K-Dense-AI

  Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth observation, and 30+ scientific domains. Supports satellite imagery processing (Sentinel, Landsat, MODIS, SAR,…

• Imaging Data Commons

  by @K-Dense-AI

  Query and download public cancer imaging data from NCI Imaging Data Commons. Invoke for any question about IDC collections, cancer imaging datasets, DICOM data access, radiology (CT, MR, PET) or pathology AI training sets,…

• Gtars

  by @K-Dense-AI

  Use Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenization, fragment processing, and refget/BEDbase planning across Python, Rust, and the CLI.

• Geniml

  by @K-Dense-AI

  Use Geniml for audited local genomic-interval workflows: validate BED and universe contracts, plan Region2Vec or scEmbed runs, inspect model/tokenizer compatibility, and assess consensus universes.

• Geopandas

  by @K-Dense-AI

  Guidance and local audit tools for Python workflows that directly use GeoPandas GeoSeries, GeoDataFrame, spatial operations, or vector-data I/O.

• Aeon

  by @K-Dense-AI

  This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data,…

• Dnanexus Integration

  by @K-Dense-AI

  Build and operate reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow. Use for DNAnexus data transfers, dxapp.json development, execution monitoring,…

• Genomic Coordinates

  by @K-Dense-AI

  Convert genomic intervals between coordinate conventions, normalise and compare variant representations, and detect assembly or contig-naming mismatches before they corrupt an analysis. Use whenever coordinates cross a format,…

• Gget

  by @K-Dense-AI

  Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST/BLAT, viral sequence downloads, AlphaFold structures, enrichment analysis, OpenTargets, COSMIC, CELLxGENE, and 8cube mouse…

• Datamol

  by @K-Dense-AI

  Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel…

• Get Available Resources

  by @K-Dense-AI

  Detect host inventory and effective CPU, memory, disk, scheduler, container, and accelerator limits when a user asks for resource-aware planning or before a clearly resource-sensitive local workload. Produces a redacted JSON…

• Diffdock

  by @K-Dense-AI

  DiffDock and DiffDock-L molecular docking. Use for protein-small-molecule pose prediction from PDB or sequence plus SMILES/SDF/MOL2, batch docking, virtual screening, and pose-confidence interpretation. Not for binding affinity…

• Deeptools

  by @K-Dense-AI

  NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.

• Alphagenome

  by @K-Dense-AI

  Look up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus raw and quantile scores for RNA-seq, DNase, ATAC, ChIP-TF, ChIP-histone, CAGE,…

• Etetoolkit

  by @K-Dense-AI

  Analyze, manipulate, compare, annotate, and visualize phylogenetic or other hierarchical trees with ETE 4. Use for Newick/Nexus tree I/O, topology edits and pattern matching, Robinson-Foulds comparisons, gene-tree evolutionary…

• Deepchem

  by @K-Dense-AI

  Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featurization options and MoleculeNet benchmarks. Best for quick…

• Bids

  by @K-Dense-AI

  Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying…

• Histolab

  by @K-Dense-AI

  Lightweight WSI tile extraction and preprocessing. Use for basic slide processing, tissue detection, tile extraction, and stain normalization for H&E images. Best for simple pipelines, dataset preparation, and quick tile-based…

• Biopython

  by @K-Dense-AI

  Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics…

• Bioservices

  by @K-Dense-AI

  Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across…

• Infographics

  by @K-Dense-AI

  Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3.6 Flash for quality review. Integrates research-lookup and web search for accurate data. Supports 10 infographic types, 8…

• Astropy

  by @K-Dense-AI

  Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time systems, WCS, and cosmology. Use when implementing or debugging astronomical…

• Experimental Design

  by @K-Dense-AI

  Design experiments and studies BEFORE data is collected — choosing a design, randomizing, blocking, and laying out treatment combinations so results are interpretable. Use whenever someone is planning a study, asks how to assign…

• Bulk Rnaseq

  by @K-Dense-AI

  End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon, featureCounts), assembles a gene-level counts matrix, then hands off…

• Hugging Science

  by @K-Dense-AI

  Use when the user is doing AI/ML work in a scientific domain such as biology, chemistry, physics, astronomy, climate, genomics, materials, medicine, ecology, energy, engineering, math, drug discovery, protein design, weather…

• Cirq

  by @K-Dense-AI

  Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level circuit…

• Dask

  by @K-Dense-AI

  Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with…

• Flowio

  by @K-Dense-AI

  Read, inspect, and write Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO. Use for low-level FCS metadata and channel inspection, NumPy event extraction, multi-dataset files, table export, and FCS 3.1 creation;…

• Arbor

  by @K-Dense-AI

  Autonomously improve a real artifact (code, training recipe, agent harness, data pipeline, prompt) against an objective and an evaluator, using Hypothesis Tree Refinement (HTR) from the Arbor paper. Use this whenever someone…

• Anndata

  by @K-Dense-AI

  Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic…

• Benchling Integration

  by @K-Dense-AI

  Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries. Use when automating lab data with benchling-sdk or the v2 API.

• Esm

  by @K-Dense-AI

  Use when working directly with the `esm` Python SDK, ESM3 or ESMC model IDs, Forge/Biohub inference clients, or ESMFold2 folding workflows.

• Genomic Intelligence

  by @K-Dense-AI

  Predict regulatory features, gene structure, and expression directly from DNA sequence using Genomic Intelligence's hosted transformer DNA language models — no local GPU or model weights. Six tasks over a REST API and a hosted…

• Exa Search

  by @K-Dense-AI

  Web toolkit powered by Exa, tuned for scientific and technical content. Use this skill when the user needs to search the web or fetch/extract URL content. Covers: web search (semantic lookups, research, current info — with…

• Arboreto

  by @K-Dense-AI

  Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target…

• Datalad

  by @K-Dense-AI

  Retrieve, version, and publish scientific datasets with DataLad and git-annex, and capture computational provenance with datalad run, rerun, and containers-run. Use when cloning or fetching data from OpenNeuro, DANDI,…

• Cellxgene Census

  by @K-Dense-AI

  Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD…

• Generate Image

  by @K-Dense-AI

  Generate or edit images with AI models through the OpenRouter Image API (Gemini, Seedream, Recraft, GPT-Image, Riverflow). Use for photos, illustrations, artwork, concept art, visual assets, logos, and image editing or…

• Deepspot M

  by @K-Dense-AI

  Generate transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Use when you need spatial gene expression in log1p-CPM for 224x224 tiles at about 20x, want to query protein-coding genes by symbol…

• Cobrapy

  by @K-Dense-AI

  Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.

• Folklore Variant Evidence

  by @K-Dense-AI

  Retrieve ClinGen gene-disease validity assertions for a public gene or disease, and review source-linked public evidence and literature for one supported GRCh38 germline nuclear SNV or simple indel through Folklore Clinical…

• Consciousness Council

  by @K-Dense-AI

  Run a multi-perspective Mind Council deliberation on any question, decision, or creative challenge. Use this skill whenever the user wants diverse viewpoints, needs help making a tough decision, asks for a council/panel/board…

• Dhdna Profiler

  by @K-Dense-AI

  Extract cognitive patterns and thinking fingerprints from any text. Use this skill when the user wants to analyze how someone thinks, understand cognitive style, profile writing or speech patterns, compare thinking styles…

• Adaptyv

  by @K-Dense-AI

  How to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieval. Use this skill whenever the user mentions Adaptyv, Foundry API, protein binding assays, protein screening…

• Glycoengineering

  by @K-Dense-AI

  Analyze and engineer protein glycosylation. Scan sequences for N-glycosylation sequons (N-X-S/T), predict O-glycosylation hotspots, and access curated glycoengineering tools (NetOGlyc, GlycoShield, GlycoWorkbench). For…

• Depmap

  by @K-Dense-AI

  Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivity data, and gene effect profiles. Use for identifying cancer-specific vulnerabilities, synthetic lethal…

• Bgpt Paper Search

  by @K-Dense-AI

  Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions.…

• Nature Figure

  by @Yuan1z0825

  Create, revise, audit, and export manuscript scientific figures in Python or R. Use for 论文配图、科研绘图、多面板图 and submission-ready plots, or explicitly requested AI-generated graphical abstracts and mechanism schematics. Not for…

• Nature Paper2ppt

  by @Yuan1z0825

  Create or improve a Chinese academic PPTX from a scientific paper or research reading notes, with source figures and speaker notes. Use for 论文做PPT、文献汇报、组会PPT and paper-based conference or defense presentations.

• Nature Ref Verifier

  by @Yuan1z0825

  对学术文献逐条执行多源交叉验证，逐字段对比作者、标题、年份、卷期、页码， 标记卷年/DOI年冲突、作者顺序异常、页码偏差等问题，输出结构化验证报告。 可批量处理整篇论文/开题报告的参考文献列表，也可单条校验，支持与 Zotero 同步修正。

• Prompt Engineering Patterns

  by @wshobson

  This skill should be used when the user asks to "optimize a prompt", "improve prompt performance", "design a prompt template", "write better prompts", "debug prompt issues", "use chain-of-thought", "structured prompting",…

• Brand Landingpage

  by @wshobson

  Brand-first landing page designer — runs a brand-identity interview (colors, typography, shape language), then generates and iterates on a polished landing page via Stitch with deployment-ready HTML. Use when the user asks to…

• Kpi Dashboard Design

  by @wshobson

  Design effective KPI dashboards with metrics selection, visualization best practices, and real-time monitoring patterns. Use this skill when building an executive SaaS metrics dashboard tracking MRR, churn, and LTV/CAC ratios;…

• Dbt Transformation Patterns

  by @wshobson

  Master dbt (data build tool) for analytics engineering with model organization, testing, documentation, and incremental strategies. Use when building data transformations, creating data models, or implementing analytics…

• Sql Optimization Patterns

  by @wshobson

  Master SQL query optimization, indexing strategies, and EXPLAIN analysis to dramatically improve database performance and eliminate slow queries. Use when debugging slow queries, designing database schemas, or optimizing…

• Service Mesh Observability

  by @wshobson

  Implement comprehensive observability for service meshes including distributed tracing, metrics, and visualization. Use when setting up mesh monitoring, debugging latency issues, or implementing SLOs for service communication.

• Data Storytelling

  by @wshobson

  Transform data into compelling narratives using visualization, context, and persuasive structure. Use when presenting analytics to stakeholders, creating data reports, or building executive presentations.

• Data Quality Frameworks

  by @wshobson

  Implement data quality validation with Great Expectations, dbt tests, and data contracts. Use when building data quality pipelines, implementing validation rules, or establishing data contracts.

• Spark Optimization

  by @wshobson

  Optimize Apache Spark jobs with partitioning, caching, shuffle optimization, and memory tuning. Use when improving Spark performance, debugging slow jobs, or scaling data processing pipelines.

• Airflow Dag Patterns

  by @wshobson

  Build production Apache Airflow DAGs with best practices for operators, sensors, testing, and deployment. Use when creating data pipelines, orchestrating workflows, or scheduling batch jobs.

• Postgresql Table Design

  by @wshobson

  Use this skill when designing or reviewing a PostgreSQL-specific schema. Covers best-practices, data types, indexing, constraints, performance patterns, and advanced features

• Cli Mastery

  by @github

  Interactive training for the GitHub Copilot CLI. Guided lessons, quizzes, scenario challenges, and a full reference covering slash commands, shortcuts, modes, agents, skills, MCP, and configuration. Say "cliexpert" to start.

• Copilot Usage Metrics

  by @github

  Retrieve and display GitHub Copilot usage metrics for organizations and enterprises using the GitHub CLI and REST API.

• Cosmosdb Datamodeling

  by @github

  Step-by-step guide for capturing key application requirements for NoSQL use-case and produce Azure Cosmos DB Data NoSQL Model design using best practices and common patterns, artifacts_produced: "cosmosdb_requirements.md" file…

• Breakdown Epic Pm

  by @github

  Prompt for creating an Epic Product Requirements Document (PRD) for a new epic. This PRD will be used as input for generating a technical architecture specification.

• Breakdown Feature Prd

  by @github

  Prompt for creating Product Requirements Documents (PRDs) for new features, based on an Epic.

• Visual Verdict

  by @Yeachan-Heo

  Structured visual QA verdict for screenshot-to-reference comparisons

• Arize Evaluator

  by @github

  Handles LLM-as-judge evaluation workflows on Arize including creating/updating evaluators, running evaluations on spans or experiments, managing tasks, trigger-run operations, column mapping, and continuous monitoring. Use when…

• Arize Dataset

  by @github

  Creates, manages, and queries Arize datasets and examples. Covers dataset CRUD, appending examples, exporting data, and file-based dataset creation using the ax CLI. Use when the user needs test data, evaluation examples, or…

• Arduino Azure Iot Edge Integration

  by @github

  Design and implement Arduino integration with Azure IoT Hub and IoT Edge, including secure provisioning, resilient telemetry, command handling, and production guardrails.

• Acreadiness Assess

  by @github

  Run the AgentRC readiness assessment on the current repository and produce a static HTML dashboard at reports/index.html. Wraps `npx github:microsoft/agentrc readiness` and hands off rendering to the @ai-readiness-reporter…

• Arize Link

  by @github

  Generates deep links to the Arize UI for traces, spans, sessions, datasets, labeling queues, evaluators, and annotation configs. Produces clickable URLs for sharing Arize resources with team members. Use when the user wants to…

• Brag Sheet

  by @github

  Turn vague "what did I do?" into evidence-backed impact statements for performance reviews, self-reviews, promotion packets, and weekly updates. Uniquely mines Copilot CLI session logs to reconstruct forgotten work, plus git…

• Ad Campaign Analyzer

  by @github

  Use this skill when the user shares ad campaign performance data and asks what to cut, scale, or test. Trigger for prompts like "analyze my ad campaigns", "where am I wasting ad spend", "reallocate my ad budget", "which ads are…

• Aws Cost Optimize

  by @github

  Analyze AWS resources used in the app (IaC files and/or resources in a target account/region) and optimize costs - creating GitHub issues for identified optimizations.