Research AI agent skills

1,871 skills in the archive. Read a skill’s instructions or open its original repository.

• Deeppapernote

  by @917Dhj

  Generate a high-quality deep-reading note for a single paper and write it into an Obsidian-style vault. Use when the user gives a paper title, DOI, URL, arXiv ID, Zotero item, or local PDF and wants a polished Markdown note with…

• Form Filling

  by @platonai

  Automatically fills web forms using provided field data and can optionally submit the form. Use when automating form input, testing forms, or submitting structured data to websites.

• Clawpathy Autoresearch

  by @ClawBio

  Eval-driven skill tuning. Given a task and an LLM-judge rubric, iteratively rewrites a SKILL.md until a downstream executor agent performs well against the judge. Low-code: all evaluation is LLM-as-judge, not deterministic Python.

• Gwas Prs

  by @ClawBio

  Calculate polygenic risk scores from DTC genetic data using the PGS Catalog

• Hla Typing

  by @ClawBio

  HLA allele typing from WGS/WES VCF data

• Clinical Variant Reporter

  by @ClawBio

  Classify germline variants from VCF/BCF files according to the ACMG/AMP 2015 28-criteria evidence framework and generate clinical-grade interpretation reports with per-variant evidence audit trails and ACMG SF v3.2 secondary…

• Pubmed Summariser

  by @ClawBio

  Search PubMed, preserve complete abstracts and sections, and produce research briefings with abstract openings or optional OpenAI/Ollama summaries.

• Omics Target Evidence Mapper

  by @ClawBio

  Aggregate public target-level evidence across omics and translational sources for research triage.

• Xena Tcga Gene Query

  by @ClawBio

  Query TCGA tumor biology through the ucscxenatoolspy API. Supports tumor-vs-normal differential expression, gene-gene correlation, survival association, and cancer catalogue browsing across 30+ TCGA cancer types.

• Clinpgx

  by @ClawBio

  Query the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drug labels

• Article Data Fetcher

  by @ClawBio

  Given an article DOI or PubMed ID, discover and download the genomics data files deposited by the authors (VCF, FASTA, H5AD, CSV, JSON, BAM, etc.) from public repositories such as GEO, ENA, Zenodo, Figshare, Dryad, and OSF.

• Rare Disease Rnaseq

  by @ClawBio

  Blood RNA-seq expression-outlier detection for rare-disease diagnostics. Cases scored against a control reference panel; outliers ranked and filtered by a haploinsufficient disease-gene panel.

• Lit Synthesizer

  by @ClawBio

  Search PubMed and bioRxiv for bioinformatics literature, synthesise results into a structured report, and build a citation graph — all locally, with a reproducibility bundle.

• Bio Orchestrator

  by @ClawBio

  Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.

• Bgpt Mcp

  by @ClawBio

  Search scientific papers via the BGPT MCP server and retrieve structured experimental data — methods, results, conclusions, quality scores, and 25+ metadata fields per paper.

• Claw Semantic Sim

  by @ClawBio

  Semantic Similarity Index for disease research literature using PubMedBERT embeddings

• Research Paper Writing

  by @mateaix

  Write ML papers for NeurIPS/ICML/ICLR: design→submit.

• Arxiv

  by @mateaix

  Search arXiv papers by keyword, author, category, or ID.

• Chat With Agent

  by @mateaix

  当需要咨询其他 Agent、寻求帮助，或用户明确要求某个 Agent 参与时使用。支持单次委托和多任务并行委托。

• Multi Agent Collaboration

  by @mateaix

  当任务需要多个 Agent 的专业能力协同完成时，编排多 Agent 并行或串行协作，整合各方结果。

• Review Overleaf

  by @fcakyon

  This skill should be used when user asks to "fetch overleaf review comments", "address overleaf reviews", "apply overleaf comments", "review my overleaf paper", "sync overleaf feedback to local", "what comments are on my…

• Paper Search Usage

  by @fcakyon

  This skill should be used when user asks to "search for papers", "find research papers", "search arXiv", "search PubMed", "find academic papers", "search IEEE", "search Scopus", or "look up scientific literature".

• Vc Context Discovery

  by @withkynam

  Discover and load all relevant context for the current task. Lists feature group nested files with full paths, loads process/context/ files by domain routing. Called at the start of every agent session.

• Vc Plan Discovery

  by @withkynam

  Discover related plans for the current task: same feature folder full depth, other features active-only, general-plans active. Like vc-context-discovery but for plan artifacts.

• Reddit Research

  by @lignertys

  Do market research, user research, and product validation on Reddit with semantic search across 50K+ subreddits, 20M+ posts, and 40M+ comments via reddapi.dev - search by meaning, not keywords, no Reddit OAuth or app…

• Manim Composer

  by @adithya-s-k

  Trigger when: (1) User wants to create an educational/explainer video, (2) User has a vague concept they want visualized, (3) User mentions "3b1b style" or "explain like 3Blue1Brown", (4) User wants to plan a Manim video or…

• Ai Writing Detection

  by @dp-archive

  Comprehensive AI writing detection patterns and methodology. Provides vocabulary lists, structural patterns, model-specific fingerprints, and false positive prevention guidance. Use when analyzing text for AI authorship or…

• Pubmed Database

  by @dp-archive

  Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API…

• Academic Pptx

  by @Gabberflast

  Use this skill whenever the user wants to create or improve a presentation for an academic context — conference papers, seminar talks, thesis defenses, grant briefings, lab meetings, invited lectures, or any presentation where…

• Prompt Optimization

  by @asklokesh

  Applies prompt repetition to improve accuracy for non-reasoning LLMs

• Gauntlet Loop

  by @robonuggets

  Turns any goal into one short, paste-ready "gauntlet loop" prompt - a prompt that makes an agent set a concrete quality bar, split the work into small judgeable pieces, run a builder and a separate harsh critic on each, compare…

• Research Methodology

  by @vstorm-co

  Best practices for systematic research, source evaluation, and evidence gathering

• Report Writing

  by @vstorm-co

  Guidelines for writing well-structured, cited research reports

• Fmriprep

  by @NeuroAIHub

  Preprocess task-based or resting-state fMRI data with fMRIPrep — a robust, BIDS-App preprocessing pipeline built on FSL, ANTs, FreeSurfer, AFNI, and Nilearn. Use this skill whenever the user asks to preprocess fMRI/BOLD data,…

• Mne Python Guide

  by @NeuroAIHub

  Domain-validated pipeline guidance for EEG/MEG data analysis using MNE-Python: data loading, preprocessing (filtering, ICA, re-referencing), epoching, ERP/ERF computation, time-frequency decomposition, source localization,…

• Erp Analysis

  by @NeuroAIHub

  Domain-validated pipeline and parameter guidance for event-related potential analysis, from preprocessing through statistical testing

• Curate Research Trace

  by @NeuroAIHub

  Curate BrainPilot Trace Events into human-readable research Episodes, appropriately granular nodes, and direct depends_on relationships. Use when a report contains multiple settings, results, analyses, visualizations, findings,…

• Bayesian Cognitive Model Builder

  by @NeuroAIHub

  Domain-validated guidance for building hierarchical Bayesian cognitive models with Stan/PyMC: prior specification, model structure, MCMC diagnostics, and posterior predictive checks

• Fmri Glm Analysis Guide

  by @NeuroAIHub

  Domain-validated guidance for fMRI General Linear Model specification: HRF modeling, design matrix construction, contrast definition, confound regression, and statistical inference

• Research Literacy

  by @NeuroAIHub

  Core scientific methodology principles: research planning, method justification, assumption checking, and human-in-the-loop decision making for cognitive science and neuroscience

• Optogenetics Protocol Designer

  by @NeuroAIHub

  Domain-validated decision logic for optogenetic stimulation parameter selection, including opsin choice, light delivery, pulse protocols, fiber placement, and control conditions

• Fmri Preprocessing Pipeline Guide

  by @NeuroAIHub

  Domain-validated guidance for fMRI preprocessing decisions: motion correction, slice timing, spatial normalization, smoothing, confound regression, and quality control

• Eeg Paradigm Designer

  by @NeuroAIHub

  Expert guidance for designing EEG paradigms optimized to isolate specific ERP components, with domain-validated timing, trial count, and control condition parameters

• Cogsci Power Analysis

  by @NeuroAIHub

  Domain-specific statistical power analysis guidance for cognitive and neuroscience research, encoding effect size priors and sample size recommendations by modality

• Calcium Imaging Analysis Guide

  by @NeuroAIHub

  Domain-validated pipeline guidance for calcium imaging data analysis: motion correction, ROI extraction, neuropil correction, spike inference, and quality control

• Paper To Skill

  by @NeuroAIHub

  Interactive skill that guides extraction of research paradigms and methodological techniques from cognitive science papers into structured, reusable skills

• Self Paced Reading Designer

  by @NeuroAIHub

  Expert guidance for designing self-paced reading experiments: region segmentation, timing parameters, comprehension probes, and spillover analysis

• Neural Decoding Analysis

  by @NeuroAIHub

  Domain-validated methods and decision logic for neural decoding, RSA, temporal generalization, and encoding models in systems neuroscience

• Signal Detection Analysis

  by @NeuroAIHub

  Domain-validated decision logic, formulas, and interpretation guidelines for applying Signal Detection Theory to cognitive science data

• Drift Diffusion Model

  by @NeuroAIHub

  Expert guidance on selecting, fitting, and evaluating drift-diffusion models for two-choice response time data in cognitive science

• Neuropsych Battery Selector

  by @NeuroAIHub

  Domain-validated decision logic for selecting neuropsychological test batteries matched to suspected cognitive deficit profiles

• Cognitive Paradigm Design

  by @NeuroAIHub

  Expert guidance for selecting and parameterizing cognitive psychology experimental paradigms based on research questions

• Act R Model Builder

  by @NeuroAIHub

  Guides ACT-R cognitive model construction: chunk types, production rules, subsymbolic parameters, and model validation

• Neural Population Analysis Guide

  by @NeuroAIHub

  Guides dimensionality reduction and latent-variable analysis of neural populations (PCA, GPFA, dPCA)

• Spiking Network Model Builder

  by @NeuroAIHub

  Assists building spiking neural network simulations: neuron models, connectivity, plasticity rules

• Lesion Symptom Mapping Guide

  by @NeuroAIHub

  Advises on lesion-symptom mapping methods: VLSM, disconnection analysis, network lesion mapping

• Cogsci Statistics

  by @NeuroAIHub

  Domain-specific statistical modeling guidance for cognitive science and neuroscience, encoding when and how to apply mixed models, correction methods, Bayesian approaches, and effect size reporting

• Alternative Uses Task Designer

  by @NeuroAIHub

  Domain-validated guidance for designing Alternative Uses Task (AUT) experiments measuring divergent thinking, with parameters for AI-augmented and traditional conditions

• Divergent Thinking Scoring

  by @NeuroAIHub

  Domain-validated multi-dimensional scoring system for divergent thinking tasks, including fluency, flexibility, originality, and automated semantic distance methods

• Creativity Self Efficacy Mediation

  by @NeuroAIHub

  Domain-validated guidance for SEM-based mediation analysis of creative self-efficacy and moderation by baseline creativity in AI-augmented creativity research

• Cogsci Visualization

  by @NeuroAIHub

  Domain-specific visualization best practices for cognitive and neuroscience data, encoding plot type selection, color standards, and publication formatting

• Sentence Stimulus Norming

  by @NeuroAIHub

  Specifies norming procedures for linguistic stimuli including cloze probability, plausibility ratings, acceptability judgments, and lexical controls

• Visual Search Array Generator

  by @NeuroAIHub

  Specifies display parameters, set sizes, target-distractor similarity, and randomization constraints for visual search experiments

• Reading Time Analysis

  by @NeuroAIHub

  Guides analysis of eye-tracking reading measures including first fixation, gaze duration, regression path, and total reading time

• Evidence Accumulation Selector

  by @NeuroAIHub

  Advises on when to use DDM vs. LBA vs. race models for choice-RT data based on experimental design and research goals

• Infant Looking Time Designer

  by @NeuroAIHub

  Designs habituation and preferential-looking paradigms with age-appropriate timing parameters and exclusion criteria

• Parameter Recovery Checker

  by @NeuroAIHub

  Guides parameter recovery studies to validate model identifiability before trusting fitted parameter values

• Fmri Task Design Guide

  by @NeuroAIHub

  Guides fMRI task design: block vs. event-related vs. mixed; jittering; contrasts; power for BOLD detection

• Tom Task Selector

  by @NeuroAIHub

  Selects Theory of Mind tasks matched to target population, age, and construct with psychometric guidance

• Neuroimaging Power Guide

  by @NeuroAIHub

  Sample-size planning for fMRI/EEG studies using effect-size benchmarks and simulation-based power

• Eeg Preprocessing Pipeline Guide

  by @NeuroAIHub

  Guides EEG preprocessing: filtering, artifact rejection (ICA/ASR), re-referencing, interpolation

• Brain Connectivity Modeler

  by @NeuroAIHub

  Advises on functional/effective connectivity methods: PPI, DCM, Granger causality, graph theory

• Neuroimaging Sample Size Calculator

  by @NeuroAIHub

  Simulation-based sample-size planning for neuroimaging studies using effect-size maps

• Source Grounded Research Report

  by @NeuroAIHub

  Research a bounded factual, documentation, API, or literature question from authoritative sources and save a self-contained Markdown report with claim-level citations. Use for reading-heavy evidence gathering, not experiment…

• Contribute Skills Via Pr

  by @NeuroAIHub

  Step-by-step guidance for contributing a new skill to the NeuroAIHub/awesome_cognitive_and_neuroscience_skills repository via GitHub Pull Request, including SKILL.md format requirements, quality rules, and PR checklist

• Contribute Skill

  by @NeuroAIHub

  One-command skill contribution — generate a SKILL.md from your domain expertise and submit to GitHub Issues for maintainer review

• Verify Skill

  by @NeuroAIHub

  Interactive skill verification — assess accuracy of parameters, citations, and methodology through structured expert review

• Share Case

  by @NeuroAIHub

  One-command community case sharing — capture research context from your session and submit to GitHub Discussions

• Paper Section Writer

  by @zhnnky329

  Draft submission-ready mathematical-modeling paper sections from the approved solution package, frozen numbers, human decision ledger, and verified figures without searching scattered exploratory outputs or inventing…

• Reference Manager

  by @zhnnky329

  Manage and verify references for mathematical modeling contest papers, generating BibTeX entries, checking citation completeness, and ensuring all references are traceable to actual sources.

• Write Spec

  by @dzhng

  Break large features into independently verifiable, human-reviewable slices under a feature directory in specs/. Use for risky or multi-step feature work that needs upfront questioning, API seams, browser-playable checkpoints,…

• Launch Video

  by @dzhng

  Make a showreel-grade motion-graphics launch video, with music, that introduces a CLI, library, or product from its repo. Use when asked for a launch, promo, sizzle, or showreel video, an animated intro for a project, or a video…

• Tooluniverse Multiomic Disease Characterization

  by @wu-yc

  Comprehensive multi-omics disease characterization integrating genomics, transcriptomics, proteomics, pathway, and therapeutic layers for systems-level understanding. Produces a detailed multi-omics report with quantitative…

• Generate Scientific Method Section

  by @wu-yc

  Automated SCI-standard Methods section generator from experiment execution records. Parses LabOS skill call chains, structured JSON logs (extract_experiment_data_from_video, analyze_lab_video_cell_behavior), protocol text, and…

• Hypogenic

  by @wu-yc

  Automated LLM-driven hypothesis generation and testing on tabular datasets. Use when you want to systematically explore hypotheses about patterns in empirical data (e.g., deception detection, content analysis). Combines…

• Generate Double Column Pdf Report

  by @wu-yc

  Assembles experimental data, figures, methods, and results into a journal-style double-column PDF report. Uses reportlab or PyMuPDF for programmatic generation with title page, embedded figures/tables, section headings, body…

• Egocentric View To Structured Log

  by @wu-yc

  Converts first-person XR headset video into a structured experiment timeline log. Extracts timestamped events (action, object, location, result) via VLM or action recognition, outputs Markdown or JSON for downstream analysis,…

• Hmdb Database

  by @wu-yc

  Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.

• Cosmic Database

  by @wu-yc

  Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.

• Asc Metadata Sync

  by @rorkai

  Sync, validate, and apply App Store metadata with the current asc canonical metadata workflow. Use when updating metadata, localizations, keywords, or migrating legacy fastlane metadata.

• Query Token Info

  by @binance

  Per-token details for a specific token identified by keyword, symbol, or contract address: (1) search — find tokens by keyword/symbol/contract; (2) meta — static info: name, symbol, logo, social links, creator, official website;…

• Second Brain Report

  by @undefined-ui

  Produce a research report from the vault: scope the question against existing pages, name the gaps, and write findings with citations, disagreements and limits. Use this skill when the user asks for a research report, a deep…

• Second Brain Write

  by @undefined-ui

  Draft from the vault: outline from concept pages, keep citations to the user's own sources, and surface where their material disagrees. Use this skill when the user wants to write an article, post, essay or newsletter based on…

• Swarm Planner

  by @am-will

  [EXPLICIT INVOCATION ONLY] Creates dependency-aware implementation plans optimized for parallel multi-agent execution.

• Write Locale Translations

  by @videojs

  Translate or audit the values in a Video.js locale pack. Use when a key needs values, en.ts copy changes underneath a pack, or one pack needs an audit.

• Research Integrity Audit

  by @xuzhougeng

  学术审查 / research-integrity screening of a manuscript's figures and reported numbers. Finds duplicated, reused, or transformed image panels and data anomalies: copied value blocks, fixed differences/ratios between groups, digit…

• Literature Review

  by @xuzhougeng

  Retrieve, verify, and synthesize scientific literature. Use for seminal-paper lookups, evidence summaries, method comparisons, and gap analyses. Every citation must come from a live lookup, never from memory; retractions are…

• Research Handoff

  by @xuzhougeng

  Prepare a traceable research handoff when a user asks to transfer an existing project using supplied notes and files; do not use for new literature searches or new analysis.

• Journal Club Ppt

  by @xuzhougeng

  Use this skill whenever the user provides a scientific paper PDF and asks for a group-meeting literature report, journal-club slides, 文献汇报PPT, 组会PPT, paper presentation, article walkthrough, or to explain a paper with…

• Self Awareness

  by @xuzhougeng

  Wisp-science's actual agent tool surface and runtime boundaries. Load this when deciding which Wisp tool can perform a task, checking whether Python can reach agent or desktop capabilities, choosing between interactive analysis…